Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Cryo-EM structure of a conjugative type 4 secretion system identifies a molecular switch regulating conjugative pilus biogenesis
Journal, issue, pages	To Be Published, Year 2024
Publish date	Jan 25, 2024 (structure data deposition date)
Authors	Mace K / Waksman G
External links	To Be Published / Search PubMed
Methods	EM (single particle)
Resolution	2.46 - 6.22 Å
Structure data	19478 8rt4 EMDB-19478: O-Layer C14 at 2.46A - Local refinement with C14 symmetry of the O-layer of the outer membrane core complex from the fully-assembled R388 type IV secretion system. PDB-8rt4: O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 2.46 Å 19479 8rt5 EMDB-19479: I-Layer C16 at 2.69A - Local refinement with C16 symmetry of the I-layer of the outer membrane core complex from the fully-assembled R388 type IV secretion system. PDB-8rt5: I-layer structure (TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 2.69 Å 19480 8rt6 EMDB-19480: Conformation-A OMCC at 3.18A - Refinement without symmetry of the outer membrane core complex from the fully-assembled R388 type IV secretion system. PDB-8rt6: Conformation-A of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 3.18 Å 19481 8rt7 EMDB-19481, PDB-8rt7: Conformation-B of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 2.93 Å 19482 8rt8 EMDB-19482: Conformation-C OMCC at 3.05A - Refinement without symmetry of the outer membrane core complex from the fully-assembled R388 type IV secretion system. PDB-8rt8: Conformation-C of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 3.05 Å 19483 8rt9 EMDB-19483: Stalk C5 at 2.97A - Local refinement with C5 symmetry of the Stalk complex from the fully-assembled R388 type IV secretion system. PDB-8rt9: Stalk complex full-length structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 2.97 Å 19484 8rta EMDB-19484: Arches-protomer at 6.22A - Refinement without symmetry of the Arches-protomer complex from the fully-assembled R388 type IV secretion system. PDB-8rta: Arches-protomer complex full-length structure (TrwJ/VirB8) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 6.22 Å 19485 8rtb EMDB-19485: Extended inner membrne complex (IMC) protomer at 3.83A - Refinement without symmetry of the extended IMC-protomer complex from the fully-assembled R388 type IV secretion system. PDB-8rtb: Extended inner membrane complex (IMC) protomer structure (TrwM/VirB3-TrwK/VirB4-TrwI/VirB6-TrwG/VirB8-TrwE/VirB10) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 3.83 Å 19488 8rtd EMDB-19488: Stalk-Arches-IMC at 4.33A - Refinement without symmetry of the Stalk-Arches-IMC from the fully-assembled R388 type IV secretion. PDB-8rtd: Stalk-Arches-IMC structure from the fully-assembled R388 type IV secretion system determined by cryo-EM. Method: EM (single particle) / Resolution: 4.33 Å
Source	escherichia coli (E. coli)
Keywords	MEMBRANE PROTEIN / type IV secretion system type 4 secretion system T4SS O-layer core complex outer membrane complex R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB10 VirB9 VirB7 TrwE TrwF TrwH / type IV secretion system type 4 secretion system T4SS I-layer core complex outer membrane complex R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB10 VirB9 TrwE TrwF / type IV secretion system type 4 secretion system T4SS OMCC Conformation-A core complex outer membrane complex R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB10 VirB9 VirB7 TrwE TrwF TrwH / type IV secretion system type 4 secretion system T4SS OMCC Conformation-B core complex outer membrane complex R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB10 VirB9 VirB7 TrwE TrwF TrwH / type IV secretion system type 4 secretion system T4SS OMCC Conformation-C core complex outer membrane complex R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB10 VirB9 VirB7 TrwE TrwF TrwH / type IV secretion system type 4 secretion system T4SS Stalk R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB5 VirB6 TrwI TrwJ / type IV secretion system type 4 secretion system T4SS Arches Arches-protomer R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB8 VirB10 TrwG TrwE / type IV secretion system type 4 secretion system T4SS inner membrane complex IMC IMC-protomer Extended IMC R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB3 VirB4 VirB6 VirB8 VirB10 TrwM TrwK TrwI TrwG TrwE / type IV secretion system type 4 secretion system T4SS Arches Stalk inner membrane complex IMC R388 plasmid conjugation bacterial secretion secretion secretion system protein complex VirB3 VirB4 VirB5 VirB6 VirB8 VirB10 TrwM TrwK TrwJ TrwI TrwG TrwE