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Structure paper

TitleCrystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs
Journal, issue, pagesTo Be Published
Publish dateJan 7, 2022 (structure data deposition date)
AuthorsLu, B. / Ohayon, Y.P. / Sha, R. / Woloszyn, K. / Rothschild, L. / Wind, S. / Hendrickson, W. / Mao, C. / Seeman, N.C. / Vecchioni, S.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution3.92 - 6.61 Å
Structure data

PDB-7tft:
[T:Ag+/Hg2+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s
Method: X-RAY DIFFRACTION / Resolution: 4.42 Å

PDB-7tfu:
[T:Ag+/Hg2+:T--(pH11-pH7; 30s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 30s
Method: X-RAY DIFFRACTION / Resolution: 4.55 Å

PDB-7tfv:
[T:Ag+/Hg2+:T--(pH11-pH7; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 60s
Method: X-RAY DIFFRACTION / Resolution: 4.23 Å

PDB-7tfw:
[T:Ag+/Hg2+:T--(pH11-pH7; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 60s
Method: X-RAY DIFFRACTION / Resolution: 3.92 Å

PDB-7tfx:
[T:Ag+/Hg2+:T--(pH11-pH7; 120s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 120s
Method: X-RAY DIFFRACTION / Resolution: 4.99 Å

PDB-7tfy:
[T:Ag+/Hg2+:T--(pH11-pH7; 300s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 300s
Method: X-RAY DIFFRACTION / Resolution: 4.71 Å

PDB-7tfz:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 5s
Method: X-RAY DIFFRACTION / Resolution: 6.13 Å

PDB-7tg0:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 30s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 30s
Method: X-RAY DIFFRACTION / Resolution: 6.05 Å

PDB-7tg1:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 60s
Method: X-RAY DIFFRACTION / Resolution: 4.85 Å

PDB-7tg2:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 90s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 90s
Method: X-RAY DIFFRACTION / Resolution: 4.37 Å

PDB-7tg3:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 300s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 300s
Method: X-RAY DIFFRACTION / Resolution: 4.59 Å

PDB-7tg4:
[T:Ag+/Hg2+:T--(pH11-pH7; 5s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 5s
Method: X-RAY DIFFRACTION / Resolution: 5.21 Å

PDB-7tg6:
[T:Ag+/Hg2+:T--(pH11-pH7; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 30s
Method: X-RAY DIFFRACTION / Resolution: 4.82 Å

PDB-7tg7:
[T:Ag+/Hg2+:T--(pH11-pH7; 60s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 60s
Method: X-RAY DIFFRACTION / Resolution: 3.94 Å

PDB-7tg8:
[T:Ag+/Hg2+:T--(pH11-pH7; 90s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 90s
Method: X-RAY DIFFRACTION / Resolution: 5.46 Å

PDB-7tg9:
[T:Ag+/Hg2+:T--(pH11-pH7; 300s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 300s
Method: X-RAY DIFFRACTION / Resolution: 4.69 Å

PDB-7tga:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 30s
Method: X-RAY DIFFRACTION / Resolution: 6.61 Å

PDB-7tgb:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 60s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 60s
Method: X-RAY DIFFRACTION / Resolution: 5.36 Å

PDB-7tgc:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 90s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 90s
Method: X-RAY DIFFRACTION / Resolution: 5.19 Å

PDB-7tgd:
[T:Ag+/Hg2+:T--(pH8.5-pH11; 300s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 300s
Method: X-RAY DIFFRACTION / Resolution: 5.25 Å

PDB-8dxv:
[T:Au+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s
Method: X-RAY DIFFRACTION / Resolution: 4.59 Å

PDB-8dxw:
[T:Au+:T--(pH11-pH7; 15s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 15s
Method: X-RAY DIFFRACTION / Resolution: 4.52 Å

PDB-8dxx:
[T:Au+:T--(pH11-pH7; 45s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 45s
Method: X-RAY DIFFRACTION / Resolution: 4.07 Å

PDB-8dxy:
[T:Au+:T--(pH11-pH7; 180s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 180s
Method: X-RAY DIFFRACTION / Resolution: 4.87 Å

PDB-8dxz:
[T:Au+:T--(pH11-pH7; 420s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 420s
Method: X-RAY DIFFRACTION / Resolution: 4.71 Å

Chemicals

ChemComp-HG:
Unknown entry / Mercury (element)

ChemComp-AG:
SILVER ION / Silver

ChemComp-AU:
Unknown entry

Source
  • synthetic construct (others)
KeywordsDNA / tensegrity triangle / self-assembling crystal / metal-mediated mismatch

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