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Structure paper

TitleCryo-EM structure of human XPR1 in apo state
Journal, issue, pagesMol. Cell, Year 2025
Publish dateOct 11, 2024 (structure data deposition date)
AuthorsWang X / Bai Z / Wallis C / Wang H / Han Y / Jin R / Lei M / Gu C / Jessen H / Shears S ...Wang X / Bai Z / Wallis C / Wang H / Han Y / Jin R / Lei M / Gu C / Jessen H / Shears S / Sun Y / Corry B / Zhang Y
External linksMol. Cell / Search PubMed
MethodsEM (single particle)
Resolution3.12 - 7.52 Å
Structure data

EMDB-61859, PDB-9jxd:
Cryo-EM structure of human XPR1 in apo state
Method: EM (single particle) / Resolution: 3.29 Å

EMDB-61860, PDB-9jxe:
Cryo-EM structure of apo human XPR1, class 1, with one visible SPX domain
Method: EM (single particle) / Resolution: 3.85 Å

EMDB-61861, PDB-9jxf:
Cryo-EM structure of apo human XPR1, class 2, with asymmetrically dimerized SPX domains
Method: EM (single particle) / Resolution: 4.31 Å

EMDB-61862, PDB-9jxg:
Cryo-EM structure of apo human XPR1, class 3, with symmetrically dimerized SPX domains
Method: EM (single particle) / Resolution: 3.75 Å

EMDB-61863, PDB-9jxh:
Cryo-EM structure of human XPR1 in complex with InsP8
Method: EM (single particle) / Resolution: 3.15 Å

EMDB-61864, PDB-9jxi:
Cryo-EM structure of human XPR1 with InsP8 in an 'arch-like' intermediate state of the SPX domain
Method: EM (single particle) / Resolution: 3.31 Å

EMDB-61865, PDB-9jxj:
Cryo-EM structure of human XPR1 in a closed state at both the extracellular and intracellular gates, obtained through local refinement
Method: EM (single particle) / Resolution: 3.22 Å

EMDB-61866, PDB-9jxk:
Cryo-EM structure of human XPR1 in a closed state at the intracellular gate and an open state at the extracellular gate, obtained through local refinement
Method: EM (single particle) / Resolution: 3.38 Å

EMDB-61867, PDB-9jxl:
Cryo-EM structure of human XPR1 in an open state at the intracellular gate and a closed state at the extracellular gate, obtained through local refinement
Method: EM (single particle) / Resolution: 3.23 Å

EMDB-61868, PDB-9jxm:
Cryo-EM structure of one subunit of the human XPR1 homodimer with both the intracellular and extracellular gates in an open state, obtained through local refinement
Method: EM (single particle) / Resolution: 3.48 Å

EMDB-61869, PDB-9jxn:
Cryo-EM structure of human XPR1-R459C
Method: EM (single particle) / Resolution: 3.12 Å

EMDB-61870, PDB-9jxo:
Cryo-EM structure of human XPR1-G621A
Method: EM (single particle) / Resolution: 3.48 Å

EMDB-61871, PDB-9jxp:
Cryo-EM structure of human XPR1-R570L
Method: EM (single particle) / Resolution: 3.53 Å

EMDB-61872: Cryo-EM structure of XPR1-KIDINS220 complex
Method: EM (single particle) / Resolution: 3.44 Å

EMDB-61873: Local refinement of SPX and ARs in XPR1-KIDINS220 complex
Method: EM (single particle) / Resolution: 3.54 Å

EMDB-61874: Local refinement of additional KIDINS220 TM-helix in XPR1-KIDINS220 complex
Method: EM (single particle) / Resolution: 3.75 Å

EMDB-61875, PDB-9jxq:
Complex of XPR1-KIDINS220
Method: EM (single particle) / Resolution: 3.44 Å

EMDB-61876: Cryo-EM structure of XPR1-KIDINS220-InsP8 complex
Method: EM (single particle) / Resolution: 4.47 Å

EMDB-61877, PDB-9jxr:
Cryo-EM structure of Drosophila melanogaster PXo-G604A
Method: EM (single particle) / Resolution: 3.53 Å

EMDB-61878: Cryo-EM structure of Drosophila melanogaster PXo
Method: EM (single particle) / Resolution: 5.85 Å

EMDB-61879: Cryo-EM structure of PHO1
Method: EM (single particle) / Resolution: 7.52 Å

Chemicals

ChemComp-I8P:
(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

Source
  • homo sapiens (human)
  • drosophila melanogaster (fruit fly)
KeywordsTRANSPORT PROTEIN / phosphate channel;phosphate exporter;PFBC / phosphate channel

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