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TitleDiscovery of membrane channel modulators via DNA encoded library screening using native like membrane protein nanoparticles.
Journal, issue, pagesSci Rep, Year 2026
Publish dateJun 15, 2026
AuthorsFrancesco V Reddavide / Trine L Toft-Bertelsen / Ieva Drulyte / Aspen Rene Gutgsell / Dzung Nguyen / Sara Bonetti / Katerina Vafia / Anne-Sophie Tournillon / Stephan Heiden / Daniel Grosser / Katarina Iric / Veronica Diez / Nanna MacAulay / Stefan Geschwindner / Michael Thompson / Jens Frauenfeld / Robin Löving /
PubMed AbstractDeveloping novel drugs against membrane proteins is a major challenge in drug discovery due to the difficulty of stabilizing these targets for high-throughput screenings. Pannexin 1 (PANX1) is a ...Developing novel drugs against membrane proteins is a major challenge in drug discovery due to the difficulty of stabilizing these targets for high-throughput screenings. Pannexin 1 (PANX1) is a membrane channel protein involved in various physiological and pathological processes, making it a promising target for drug discovery. However, efforts to develop PANX1-targeting therapeutics have been hindered by the inherent challenges of stabilizing the protein channel and conducting effective pharmacological screening. Here, we report a proof-of-concept workflow that integrates the Salipro lipid nanoparticle platform with DNA-Encoded Library screenings in a detergent-free format. In this case study, the Salipro DirectMX method was used to generate functional PANX1 nanoparticles for drug discovery and characterisation. Using a high-stringency selection strategy and computational approaches, we identified a specific set of candidate compounds with selective PANX1 enrichment. Surface Plasmon Resonance analysis confirmed the identification of hit compounds. Cryo-Electron Microscopy of the Salipro-PANX1-Compound complex provided structural insights into a potential compound binding site. Electrophysiological recordings in PANX1-expressing Xenopus laevis oocytes demonstrated dose-dependent inhibition of PANX1-mediated ion conductance by the compounds. These findings establish a robust workflow for ligand discovery against challenging membrane protein targets and provide novel chemical starting points for the development of PANX1 modulators.
External linksSci Rep / PubMed:42298013
MethodsEM (single particle)
Resolution4.5 Å
Structure data

EMDB-56448: Cryo-EM structure of mouse Pannexin 1 in complex with a ligand
Method: EM (single particle) / Resolution: 4.5 Å

Source
  • Mus musculus (house mouse)

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