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Structure paper

TitleCrystal structure of mouse DXO in complex with the UDP-N-acetylglucosamine cap and molecular mechanism for the decapping reactions.
Journal, issue, pagesNucleic Acids Res., Vol. 54, Year 2026
Publish dateFeb 12, 2026 (structure data deposition date)
AuthorsUllah, N. / Doamekpor, S.K. / Tong, L.
External linksNucleic Acids Res. / PubMed:42200294
MethodsX-ray diffraction
Resolution1.59 - 1.8 Å
Structure data

PDB-10yz:
Crystal structure of mouse DXO in complex with pGGGUU RNA and two magnesium ions
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-11ao:
Crystal structure of mouse DXO in complex with the oligonucleotide pA5 with 5'phosphate in the product and substrate states
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-11ap:
Crystal structure of mouse DXO in complex with the UDP-N-acetylglucosamine cap
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-UD1:
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

ChemComp-MN:
Unknown entry

Source
  • mus musculus (house mouse)
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsHYDROLASE/RNA / dxo / RNA / decapping / exoribonuclease / HYDROLASE / HYDROLASE-RNA complex / RNA BINDING PROTEIN / DXO/Rai1 enzyme / pA5 RNA / Protein Dom3Z / Noncanonical RNA cap / DXO/Rai1 family of enzymes UDP-glucose (UDP-Glc) and UDP-N-acetylglucosamine (UDP-GlcNAc)

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