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Structure paper

TitleBenzoxaborole-modified azithromycins inhibit translation without inducing ermC expression.
Journal, issue, pagesAntimicrob. Agents Chemother., Vol. 70, Page e0153925-e0153925, Year 2026
Publish dateFeb 1, 2026 (structure data deposition date)
AuthorsVolynkina, I.A. / Bortyazh, M.O. / Chen, C.-.W. / Tereshchenkov, A.G. / Karakchieva, A.O. / Lukianov, D.A. / Komarova, E.S. / Tupikin, A.E. / Skvortsov, D.A. / Tevyashova, A.N. ...Volynkina, I.A. / Bortyazh, M.O. / Chen, C.-.W. / Tereshchenkov, A.G. / Karakchieva, A.O. / Lukianov, D.A. / Komarova, E.S. / Tupikin, A.E. / Skvortsov, D.A. / Tevyashova, A.N. / Tikhomirov, A.S. / Tashlitsky, V.N. / Kabilov, M.R. / Shchekotikhin, A.E. / Dontsova, O.A. / Polikanov, Y.S. / Sergiev, P.V.
External linksAntimicrob. Agents Chemother. / PubMed:41874376
MethodsX-ray diffraction
Resolution2.45 Å
Structure data

PDB-10px:
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.45 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-K:
Unknown entry

PDB-1c9n:
BACILLUS LENTUS SUBSTILISIN VARIANT (SER 87) K27R/V104Y/N123S/T274A

ChemComp-ZN:
Unknown entry

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-HOH:
WATER

Source
  • escherichia coli (E. coli)
  • thermus thermophilus hb8 (bacteria)
  • escherichia phage t4 (virus)
KeywordsRIBOSOME / Macrolides / azithromycin / benzoxaboroles / translation / inhibition / antibiotic / drug resistance

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