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Structure paper

TitleStructural Insights Into CO 2 Transport Pathways in a W-Formate Dehydrogenase: Structural Basis for CO 2 Reduction.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 65, Page e26133-e26133, Year 2026
Publish dateJun 12, 2025 (structure data deposition date)
AuthorsVilela-Alves, G. / Manuel, R.R. / Martins, G. / Carpentier, P. / Raczynska, A. / Szaleniec, M. / Pereira, I.A.C. / Romao, M.J. / Mota, C.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:41787858
MethodsX-ray diffraction
Resolution1.64 - 2.243 Å
Structure data

PDB-9rjt:
W-formate dehydrogenase from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) - Dithionite reduced - anaerobic soaked with 58 bar CO2 for 1 min
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-9rju:
W-formate dehydrogenase from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) - anaerobic soaked with 50 bar CO2 for 1 min
Method: X-RAY DIFFRACTION / Resolution: 2.069 Å

PDB-9rjv:
W-formate dehydrogenase from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) - aerobic soaked with 55 bar oxygen
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-9rjw:
W-formate dehydrogenase from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) - aerobic soaked with 100 bar Kr
Method: X-RAY DIFFRACTION / Resolution: 1.64 Å

PDB-9rjx:
W-formate dehydrogenase from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) - Soaking with Formamide
Method: X-RAY DIFFRACTION / Resolution: 1.734 Å

PDB-9rjy:
W-formate dehydrogenase V197S from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris)
Method: X-RAY DIFFRACTION / Resolution: 2.219 Å

PDB-9rjz:
W-formate dehydrogenase Q447A from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris)
Method: X-RAY DIFFRACTION / Resolution: 2.123 Å

PDB-9rk0:
W-formate dehydrogenase S194A from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris)
Method: X-RAY DIFFRACTION / Resolution: 2.243 Å

PDB-9rk1:
W-formate dehydrogenase W491E from Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris)
Method: X-RAY DIFFRACTION / Resolution: 1.993 Å

Chemicals

ChemComp-MGD:
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-W:
Unknown entry

ChemComp-H2S:
HYDROSULFURIC ACID

ChemComp-CO2:
CARBON DIOXIDE

ChemComp-GOL:
GLYCEROL

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-OXY:
OXYGEN MOLECULE

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-KR:
KRYPTON

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-ARF:
FORMAMIDE

Source
  • nitratidesulfovibrio vulgaris str. hildenborough (bacteria)
KeywordsOXIDOREDUCTASE / Formate / CO2 / Molybdenum and Tungsten enzymes / DMSO reductase family / ELECTRON TRANSPORT

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