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Structure paper

TitleV H H antibody loop guides design of a synthetic macrocyclic peptide that potently blocks influenza virus membrane fusion.
Journal, issue, pagesNpj Viruses, Vol. 3, Page 83-83, Year 2025
Publish dateJul 9, 2025 (structure data deposition date)
AuthorsKadam, R.U. / Juraszek, J. / Brandenburg, B. / Garg, D. / Zhu, X. / Jongeneelen, M. / Schepens, W.B.G. / Stoops, B. / Vermond, J. / Goutier, W. ...Kadam, R.U. / Juraszek, J. / Brandenburg, B. / Garg, D. / Zhu, X. / Jongeneelen, M. / Schepens, W.B.G. / Stoops, B. / Vermond, J. / Goutier, W. / Tang, C. / Blokland, S. / Vogels, R. / Friesen, R.H.E. / van Dongen, M.J.P. / Wilson, I.A.
External linksNpj Viruses / PubMed:41413306
MethodsX-ray diffraction
Resolution1.59 - 2.87 Å
Structure data

PDB-9phd:
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141076 (CP8)
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-9phq:
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141088 (CP14)
Method: X-RAY DIFFRACTION / Resolution: 2.87 Å

PDB-9phs:
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141085 (CP1)
Method: X-RAY DIFFRACTION / Resolution: 2.02 Å

PDB-9pht:
Crystal structure of the A/Vietnam/1203/2004 (H5N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141085 (CP1)
Method: X-RAY DIFFRACTION / Resolution: 2.76 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-SO4:
SULFATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-CA:
Unknown entry

Source
  • influenza a virus (a/puerto rico/8/1934(h1n1))
  • synthetic construct (others)
  • influenza a virus (a/viet nam/1203/2004(h5n1))
KeywordsVIRAL PROTEIN / Influenza Virus / Hemagglutinin / Fusion inhibitors / Cyclic peptide / glycoprotein / N-glycosylation

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