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TitleStructural insights into clonal restriction and diversity in T cell recognition of two immunodominant SARS-CoV-2 nucleocapsid epitopes.
Journal, issue, pagesNat Commun, Vol. 16, Page 11457-11457, Year 2025
Publish dateAug 10, 2024 (structure data deposition date)
AuthorsYuan, P. / Chen, G. / Li, Y. / Liu, X. / Saravanakumar, S. / Zhao, J. / Ji, Q. / Wang, H. / Lin, Y.W. / Elbahnasawy, M. ...Yuan, P. / Chen, G. / Li, Y. / Liu, X. / Saravanakumar, S. / Zhao, J. / Ji, Q. / Wang, H. / Lin, Y.W. / Elbahnasawy, M. / Weng, N.P. / Pierce, B.G. / Mariuzza, R.A. / Wu, D.
External linksNat Commun / PubMed:41372155
MethodsX-ray diffraction
Resolution1.98 - 2.75 Å
Structure data

PDB-9j4t:
Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors
Method: X-RAY DIFFRACTION / Resolution: 2.04 Å

PDB-9j4u:
Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors
Method: X-RAY DIFFRACTION / Resolution: 2.17 Å

PDB-9j4v:
Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-9wbd:
Crystal structure of HLA-B*07:02 in complex with SPR epitope and Q04 TCR
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-P6G:
HEXAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-GOL:
GLYCEROL

Source
  • homo sapiens (human)
  • severe acute respiratory syndrome coronavirus 2
KeywordsVIRAL PROTEIN/IMMUNE SYSTEM / TCR / T cell receptor / SARS-CoV-2 / Nucleocapside / HLA-B7 / VIRAL PROTEIN-IMMUNE SYSTEM complex / nuleocapside / hla-a2 / HLA-B7 SARS-CoV-2 / IMMUNE SYSTEM / pMHC-TCR complex

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