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TitleIdentification and characterization of binders to a cryptic and functional pocket in KRAS.
Journal, issue, pagesNat Commun, Vol. 16, Page 10836-10836, Year 2025
Publish dateAug 28, 2024 (structure data deposition date)
AuthorsBeyer, K.S. / Klein, J. / Katz, S. / Welker, P. / Lanter, M. / Guthy, D. / Pollehn, K. / Gluck-Gade, A. / Bleu, M. / Desogus, J. ...Beyer, K.S. / Klein, J. / Katz, S. / Welker, P. / Lanter, M. / Guthy, D. / Pollehn, K. / Gluck-Gade, A. / Bleu, M. / Desogus, J. / Hattenberger, M. / Borrello, D. / Abdul Rahman, W. / Zink, F. / Ostermann, N. / Jahnke, W. / Dumelin, C.E. / Leder, L. / Esser, O. / Muller, L. / Marzinzik, A. / Cebe, R. / Muller, K. / Galli, G.G. / Tordella, L. / Cotesta, S. / Brachmann, S.M. / Maira, S.M.
External linksNat Commun / PubMed:41330964
MethodsX-ray diffraction
Resolution1.85 - 2.1 Å
Structure data

PDB-9glu:
Crystal structure of KRasG12D-GDP in complex with the peptide MPB1
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-9glw:
NRas-Q61R-GTP in complex with the peptide MPB2
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-9glx:
NRas-Q61R-GTP in complex with the peptide MPB3
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-9glz:
KRas-G12D-GMPPnP in complex with the nanobody KM12-AM
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-HOH:
WATER

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-GNP:
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER / GppNHp, GMPPNP, energy-carrying molecule analogue*YM

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsHYDROLASE / GTPASE / SIGNALING PROTEIN / SMALL G-PROTEIN

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