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Structure paper

TitleNir2 crystal structures reveal a phosphatidic acid-sensing mechanism at ER-PM contact sites.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 122, Page e2516849122-e2516849122, Year 2025
Publish dateOct 7, 2024 (structure data deposition date)
AuthorsKim, D. / Lee, S. / Jun, Y. / Lee, C.
External linksProc. Natl. Acad. Sci. USA / PubMed:41129229
MethodsX-ray diffraction
Resolution2.05 - 2.798 Å
Structure data

PDB-9jtz:
Crystal structure of Nir2 C-terminal domain in complex with phosphatidic acid
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-9jui:
Crystal structure of FFAT motif of Nir2 bound to VAPB
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-9jyx:
Crystal structure of Nir2 DDHD domain
Method: X-RAY DIFFRACTION / Resolution: 2.798 Å

PDB-9jz1:
Crystal structure of Nir2 C-terminal domain in complex with phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.402 Å

PDB-9jzp:
Crystal structure of Nir2 C-terminal domain
Method: X-RAY DIFFRACTION / Resolution: 2.322 Å

Chemicals

ChemComp-44E:
(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate / phospholipid*YM

ChemComp-DW3:
2-oxidanylethanal

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-ZN:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

Source
  • mus musculus (house mouse)
  • homo sapiens (human)
KeywordsLIPID BINDING PROTEIN / PLC signaling / PI cycle / Membrane contact site / lipid transfer / lipid binding

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