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TitleNaphthyridine carbamate dimer ligand induces formation of Z-RNA-like fold of disease-related RNA and exhibits a molecular glue characteristics in crystal lattice formation.
Journal, issue, pagesNucleic Acids Res., Vol. 53, Year 2025
Publish dateFeb 7, 2025 (structure data deposition date)
AuthorsMateja-Pluta, M. / Blaszczyk, L. / Bejger, M. / Nakatani, K. / Kiliszek, A.
External linksNucleic Acids Res. / PubMed:40966516
MethodsX-ray diffraction
Resolution1.501 - 2.79 Å
Structure data

PDB-9i9w:
Crystal structure containing UGGAA/UGGAA motif interacting with NCD molecule
Method: X-RAY DIFFRACTION / Resolution: 1.501 Å

PDB-9if0:
RNA duplex containing UGGAA/UGGAA motif interacting with NCD molecule
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

PDB-9if1:
Unliganded structure of RNA duplex containing UGGAA/UGGAA motif
Method: X-RAY DIFFRACTION / Resolution: 2.79 Å

Chemicals

ChemComp-B2R:
3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate

ChemComp-HOH:
WATER

ChemComp-NCO:
COBALT HEXAMMINE(III)

Source
  • homo sapiens (human)
KeywordsRNA / UGGAA motif / SCA31 / NCD molecule / small molecule interaction

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