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Structure paper

TitlePr and Pfr structures of plant phytochrome A.
Journal, issue, pagesNat Commun, Vol. 16, Page 5319-5319, Year 2025
Publish dateNov 13, 2023 (structure data deposition date)
AuthorsNagano, S. / von Stetten, D. / Guan, K. / Chen, P.Y. / Song, C. / Barends, T. / Weiss, M.S. / Feiler, C.G. / Dorner, K. / de Diego Martinez, I. ...Nagano, S. / von Stetten, D. / Guan, K. / Chen, P.Y. / Song, C. / Barends, T. / Weiss, M.S. / Feiler, C.G. / Dorner, K. / de Diego Martinez, I. / Schubert, R. / Bielecki, J. / Brings, L. / Han, H. / Kharitonov, K. / Kim, C. / Kloos, M. / Koliyadu, J.C.P. / Koua, F.H.M. / Round, E. / Sarma, A. / Sato, T. / Schmidt, C. / Valerio, J. / Wrona, A. / Schulz, J. / de Wijn, R. / Letrun, R. / Bean, R. / Mancuso, A. / Heyne, K. / Hughes, J.
External linksNat Commun / PubMed:40544164
MethodsX-ray diffraction
Resolution1.58 - 2.2 Å
Structure data

PDB-8r44:
PAS-GAF bidomain of Glycine max phytochrome A
Method: X-RAY DIFFRACTION / Resolution: 1.58 Å

PDB-8r45:
Phytochromobilin-adducted PAS-GAF bidomain of Glycine max phytochrome A
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-9er4:
Room temperature structure of Glycine max phyA in Pr
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-9f4i:
Room temperature structure of Glycine max phyA in Pfr
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-9qzt:
Room temperature structure of Glycine max phyA in Pfr/Pr ensemble
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-CYC:
PHYCOCYANOBILIN

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-HOH:
WATER

ChemComp-O6E:
3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

Source
  • glycine max (soybean)
KeywordsPLANT PROTEIN / phytochrome / phycocyanobilin (PCB) / phyA / Glycine max

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