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TitleAsymmetric structure of podophage N4 from the Schitoviridae family reveals a type of tube-sheath short-tail architecture.
Journal, issue, pagesStructure, Vol. 33, Issue 7, Page 1250-11262.e2, Year 2025
Publish dateJul 3, 2025
AuthorsJing Zheng / Hao Pang / Hao Xiao / Junquan Zhou / Zhonghua Liu / Wenyuan Chen / Hongrong Liu /
PubMed AbstractThe tails of the majority of reported podophages are typically composed of an adaptor, a nozzle, and a needle, and flanked by six or twelve fibers. However, the Schitoviridae family, as represented ...The tails of the majority of reported podophages are typically composed of an adaptor, a nozzle, and a needle, and flanked by six or twelve fibers. However, the Schitoviridae family, as represented by podophage N4, exhibits a different tail architecture that remains poorly understood. In this study, we employed cryoelectron microscopy (cryo-EM) to determine the atomic structures of mature and empty podophage N4 particles. The N4 tail, which is connected to the head by a portal and flanked by 12 fibers, comprises an adaptor, a 12-fold extended tail tube encircled by a 6-fold tail sheath, and a plug. The extended tail sheath is composed of two proteins, gp65 and gp64. Furthermore, we identified two distinct tail conformations in the mature podophage N4. Our structures provide insights into the mechanisms of ejection and early transcription of podophage N4, as well as for N4-like phages and CrAssphages.
External linksStructure / PubMed:40318628
MethodsEM (single particle)
Resolution2.4 - 23.8 Å
Structure data

EMDB-62959, PDB-9lbz:
unique-vertex of mature phage N4
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-62960: Conformation B of unique vertex of mature phage N4
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-62961, PDB-9lc0:
tail complex of mature phage N4
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-62962, PDB-9lc1:
portal of mature phage N4
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-62963: Distal tip of mature phage N4
Method: EM (single particle) / Resolution: 3.74 Å

EMDB-62964: portal tail of empty phage N4
Method: EM (single particle) / Resolution: 10.6 Å

EMDB-62965: E-hexon of mature phage N4
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-62966: 3-fold region of mature phage N4
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-62967: 5-fold region of mature phage N4
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-62968: mismatch reconstruction of empty phage N4
Method: EM (single particle) / Resolution: 23.8 Å

EMDB-62969: Comformation B of mature phage N4
Method: EM (single particle) / Resolution: 8.9 Å

EMDB-62970: Conformation A of mature phage N4
Method: EM (single particle) / Resolution: 8.9 Å

EMDB-63001, PDB-9ld7:
The capsid of mature phage N4
Method: EM (single particle) / Resolution: 3.4 Å

Source
  • escherichia phage n4 (virus)
  • enterobacteria phage n4 (virus)
KeywordsVIRAL PROTEIN / Complex / VIRUS

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