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Structure paper

TitleStructure of the SMYD2-PARP1 Complex Reveals Both Productive and Allosteric Modes of Peptide Binding.
Journal, issue, pagesBiorxiv, Year 2024
Publish dateJul 8, 2024 (structure data deposition date)
AuthorsZhang, Y. / Alshammari, E. / Sobota, J. / Spellmon, N. / Perry, E. / Cao, T. / Mugunamalwaththa, T. / Smith, S. / Brunzelle, J. / Wu, G. ...Zhang, Y. / Alshammari, E. / Sobota, J. / Spellmon, N. / Perry, E. / Cao, T. / Mugunamalwaththa, T. / Smith, S. / Brunzelle, J. / Wu, G. / Stemmler, T. / Jin, J. / Li, C. / Yang, Z.
External linksBiorxiv / PubMed:39677743
MethodsX-ray diffraction
Resolution2.1 - 2.75 Å
Structure data

PDB-9ckc:
Crystal structure of SMYD2 in complex with two PARP1 peptides
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-9ckf:
Crystal structure of SMYD2 secondary binding site mutant
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-9ckg:
Crystal structure of SMYD2 active site mutant
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

Chemicals

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-EOH:
ETHANOL

Source
  • homo sapiens (human)
KeywordsTRANSFERASE / SMYD2 / PARP1 / Methyltransferase / SET and MYND-containing protein / mutant / protein lysine-methyltransferase

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