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TitleStructural insight into recognition of Clostridioides difficile toxin A by novel neutralizing nanobodies targeting QTIN-like motifs within its receptor-binding domain.
Journal, issue, pagesInt. J. Biol. Macromol., Vol. 283, Page 137910-137910, Year 2024
Publish dateMar 28, 2024 (structure data deposition date)
AuthorsSluchanko, N.N. / Sokolova, I.V. / Favorskaya, I.A. / Esmagambetov, I.B. / Tukhvatulin, A.I. / Alekseeva, I.A. / Ungur, A.S. / Varfolomeeva, L.A. / Boyko, K.M. / Logunov, D.Y. ...Sluchanko, N.N. / Sokolova, I.V. / Favorskaya, I.A. / Esmagambetov, I.B. / Tukhvatulin, A.I. / Alekseeva, I.A. / Ungur, A.S. / Varfolomeeva, L.A. / Boyko, K.M. / Logunov, D.Y. / Gintsburg, A.L. / Popov, V.O. / Shcheblyakov, D.V. / Belyi, Y.F.
External linksInt. J. Biol. Macromol. / PubMed:39577542
MethodsX-ray diffraction
Resolution1.65 - 2.1 Å
Structure data

PDB-8yvj:
Crystal structure of the C. difficile toxin A CROPs domain fragment 2592-2710 bound to H5.2 nanobody
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-8yvo:
Crystal structure of the C. difficile toxin A CROPs domain fragment 2639-2707 bound to C4.2 nanobody
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

Source
  • camelus dromedarius (Arabian camel)
  • clostridioides difficile 342 (bacteria)
  • clostridioides difficile (bacteria)
KeywordsTOXIN/IMMUNE SYSTEM / CROPs domain fragment / Toxin A / Complex with nanobody / Clostridioides difficile / TOXIN / TOXIN-IMMUNE SYSTEM complex

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