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Structure paper

TitleBiochemical and structural insights into a 5' to 3' RNA ligase reveal a potential role in tRNA ligation.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 121, Page e2408249121-e2408249121, Year 2024
Publish dateJun 7, 2024 (structure data deposition date)
AuthorsHu, Y. / Lopez, V.A. / Xu, H. / Pfister, J.P. / Song, B. / Servage, K.A. / Sakurai, M. / Jones, B.T. / Mendell, J.T. / Wang, T. ...Hu, Y. / Lopez, V.A. / Xu, H. / Pfister, J.P. / Song, B. / Servage, K.A. / Sakurai, M. / Jones, B.T. / Mendell, J.T. / Wang, T. / Wu, J. / Lambowitz, A.M. / Tomchick, D.R. / Pawlowski, K. / Tagliabracci, V.S.
External linksProc. Natl. Acad. Sci. USA / PubMed:39388274
MethodsX-ray diffraction
Resolution2.6 - 2.7 Å
Structure data

PDB-9c6l:
Yasminevirus c12orf29, a 5' to 3' RNA ligase
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-9c6m:
Yasminevirus c12orf29, a 5' to 3' RNA ligase, K73M mutant
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-NA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

Source
  • yasminevirus sp. gu-2018
KeywordsLIGASE / ATP-grasp / T-RNA

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