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Structure paper

TitleCrystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen.
Journal, issue, pagesJ Appl Glycosci (1999), Vol. 71, Page 81-90, Year 2024
Publish dateMar 4, 2024 (structure data deposition date)
AuthorsKashima, T. / Akama, M. / Wakinaka, T. / Arakawa, T. / Ashida, H. / Fushinobu, S.
External linksJ Appl Glycosci (1999) / PubMed:39234034
MethodsX-ray diffraction
Resolution1.96 - 3.5 Å
Structure data

PDB-8yk1:
Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct 23-844
Method: X-RAY DIFFRACTION / Resolution: 2.02 Å

PDB-8yk2:
Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-700
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-8yk3:
Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-673
Method: X-RAY DIFFRACTION / Resolution: 3.5 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-GLA:
alpha-D-galactopyranose

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

Source
  • bifidobacterium bifidum jcm 1254 (bacteria)
KeywordsHYDROLASE / Blood group B antigen / Glycoside hydrolase / ligand free

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