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Structure paper

TitleStructural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Journal, issue, pagesNat. Chem. Biol., Vol. 20, Page 1453-1460, Year 2024
Publish dateJan 9, 2023 (structure data deposition date)
AuthorsHuang, K. / Song, Q. / Fang, M. / Yao, D. / Shen, X. / Xu, X. / Chen, X. / Zhu, L. / Yang, Y. / Ren, A.
External linksNat. Chem. Biol. / PubMed:38816645
MethodsX-ray diffraction
Resolution1.59 - 2.7 Å
Structure data

PDB-8hzd:
A new fluorescent RNA aptamer bound with N618
Method: X-RAY DIFFRACTION / Resolution: 1.87 Å

PDB-8hze:
A new fluorescent RNA aptamer bound with N
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-8hzf:
A new fluorescent RNA aptamer bound with N565
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-8hzj:
A new fluorescent RNA aptamer bound with N571
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-8hzk:
A new fluorescent RNA aptamer bound with N, iridium hexammine soak
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-8hzl:
A new fluorescent RNA aptamer_III bound with N
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-8hzm:
A new fluorescent RNA aptamer bound with N, manganese soak
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-MG:
Unknown entry


ChemComp, No image

ChemComp-O2I:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-K:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION


ChemComp, No image

ChemComp-NI4:
Unknown entry


ChemComp, No image

ChemComp-NJL:
Unknown entry


ChemComp, No image

ChemComp-O00:
Unknown entry

ChemComp-IRI:
IRIDIUM HEXAMMINE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-MN:
Unknown entry

Source
  • synthetic construct (others)
KeywordsRNA / fluorescent RNA aptamer

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