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Structure paper

TitleTwo natural compounds as potential inhibitors against the Helicobacter pylori and Acinetobacter baumannii IspD enzymes.
Journal, issue, pagesInt J Antimicrob Agents, Vol. 63, Page 107160-107160, Year 2024
Publish dateDec 18, 2023 (structure data deposition date)
AuthorsChen, X. / Zhao, H. / Wang, C. / Hamed, M. / Shang, Q. / Yang, Y. / Diao, X. / Sun, X. / Hu, W. / Jiang, X. ...Chen, X. / Zhao, H. / Wang, C. / Hamed, M. / Shang, Q. / Yang, Y. / Diao, X. / Sun, X. / Hu, W. / Jiang, X. / Zhang, Y. / Hirsch, A.K.H. / Wu, D. / Zhuang, J.
External linksInt J Antimicrob Agents / PubMed:38537721
MethodsX-ray diffraction
Resolution1.6 - 2.5 Å
Structure data

PDB-8xhu:
Crystal structure of Helicobacter pylori IspDF
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-8xkf:
Crystal structure of Helicobacter pylori IspDF with substrate CTP
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-8xkg:
Crystal structure of Acinetobacter baumannii IspD
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SO4:
SULFATE ION

ChemComp-ZN:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-CTP:
CYTIDINE-5'-TRIPHOSPHATE

ChemComp-C5P:
CYTIDINE-5'-MONOPHOSPHATE

ChemComp-CDP:
CYTIDINE-5'-DIPHOSPHATE

Source
  • helicobacter pylori 26695 (bacteria)
  • acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (bacteria)
KeywordsTRANSFERASE / IspD / IspF / Helicobacter pylori / CTP / Acinetobacter baumannii / 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

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