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TitleCharge neutralization and beta-elimination cleavage mechanism of family 42 L-rhamnose-alpha-1,4-D-glucuronate lyase revealed using neutron crystallography.
Journal, issue, pagesJ. Biol. Chem., Vol. 300, Page 105774-105774, Year 2024
Publish dateAug 8, 2022 (structure data deposition date)
AuthorsYano, N. / Kondo, T. / Kusaka, K. / Arakawa, T. / Sakamoto, T. / Fushinobu, S.
External linksJ. Biol. Chem. / PubMed:38382672
MethodsX-ray diffraction / neutron diffraction
Resolution1.06 - 1.25 Å
Structure data

PDB-7yqs:
Neutron structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex
Method: X-RAY DIFFRACTION / NEUTRON DIFFRACTION / Resolution: 1.25 Å

PDB-8i4d:
X-ray structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex at 100K
Method: X-RAY DIFFRACTION / Resolution: 1.06 Å

Chemicals

ChemComp-RAM:
alpha-L-rhamnopyranose

ChemComp-ACT:
ACETATE ION

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-CA:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

Source
  • fusarium oxysporum (fungus)
KeywordsLYASE / neutron diffraction crystallography / polysaccharide lyase / gum arabic / carbohydrate-active enzyme

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