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Structure paper

TitlePoly-gamma-glutamylation of biomolecules.
Journal, issue, pagesNat Commun, Vol. 15, Page 1310-1310, Year 2024
Publish dateApr 4, 2022 (structure data deposition date)
AuthorsBashiri, G. / Bulloch, E.M.M. / Bramley, W.R. / Davidson, M. / Stuteley, S.M. / Young, P.G. / Harris, P.W.R. / Naqvi, M.S.H. / Middleditch, M.J. / Schmitz, M. ...Bashiri, G. / Bulloch, E.M.M. / Bramley, W.R. / Davidson, M. / Stuteley, S.M. / Young, P.G. / Harris, P.W.R. / Naqvi, M.S.H. / Middleditch, M.J. / Schmitz, M. / Chang, W.C. / Baker, E.N. / Squire, C.J.
External linksNat Commun / PubMed:38346985
MethodsX-ray diffraction
Resolution1.3 - 1.83 Å
Structure data

PDB-7uld:
GTP complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-7ule:
F420-1/GDP complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-7ulf:
l-glutamate/GTP complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

PDB-8g8p:
F420-2/GTP(GDP) complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

Chemicals

ChemComp-CO3:
CARBONATE ION

ChemComp-MN:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-F4I:
(2~{S})-2-[[(2~{S})-2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[2,4,8-tris(oxidanylidene)-1,9-dihydropyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxypropanoyl]amino]pentanedioic acid

ChemComp-GGL:
GAMMA-L-GLUTAMIC ACID

ChemComp-F42:
COENZYME F420

Source
  • archaeoglobus fulgidus dsm 4304 (archaea)
KeywordsLIGASE / ligase substrate complex

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