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TitleTime-resolved serial crystallography to track the dynamics of carbon monoxide in the active site of cytochrome c oxidase.
Journal, issue, pagesSci Adv, Vol. 9, Page eadh4179-eadh4179, Year 2023
Publish dateJul 29, 2022 (structure data deposition date)
AuthorsSafari, C. / Ghosh, S. / Andersson, R. / Johannesson, J. / Bath, P. / Uwangue, O. / Dahl, P. / Zoric, D. / Sandelin, E. / Vallejos, A. ...Safari, C. / Ghosh, S. / Andersson, R. / Johannesson, J. / Bath, P. / Uwangue, O. / Dahl, P. / Zoric, D. / Sandelin, E. / Vallejos, A. / Nango, E. / Tanaka, R. / Bosman, R. / Borjesson, P. / Dunevall, E. / Hammarin, G. / Ortolani, G. / Panman, M. / Tanaka, T. / Yamashita, A. / Arima, T. / Sugahara, M. / Suzuki, M. / Masuda, T. / Takeda, H. / Yamagiwa, R. / Oda, K. / Fukuda, M. / Tosha, T. / Naitow, H. / Owada, S. / Tono, K. / Nureki, O. / Iwata, S. / Neutze, R. / Branden, G.
External linksSci Adv / PubMed:38064560
MethodsX-ray diffraction
Resolution2 Å
Structure data

PDB-8ajz:
Serial femtosecond crystallography structure of CO bound ba3- type cytochrome c oxidase at 2 milliseconds after irradiation by a 532 nm laser
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-8k65:
Serial femtosecond crystallography structure of CO bound ba3- type cytochrome c oxidase without pump laser irradiation
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-8k6y:
Serial femtosecond crystallography structure of photo dissociated CO from ba3- type cytochrome c oxidase determined by extrapolation method
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-CU:
COPPER (II) ION

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-HAS:
HEME-AS

ChemComp-OLC:
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate

ChemComp-CMO:
CARBON MONOXIDE

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-HOH:
WATER

Source
  • thermus thermophilus (bacteria)
  • thermus thermophilus hb8 (bacteria)
KeywordsELECTRON TRANSPORT / Membrane protein / bioenergetics / lipidic cubic phase crystallization / serial femtosecond crystallography / pump- probe method / Membrane proteins / structural dynamics / time-resolved studies / bioenergetics of cells

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