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Structure paper

TitleMechanism of substrate hydrolysis by the human nucleotide pool sanitiser DNPH1.
Journal, issue, pagesNat Commun, Vol. 14, Page 6809-6809, Year 2023
Publish dateSep 9, 2023 (structure data deposition date)
AuthorsRzechorzek, N.J. / Kunzelmann, S. / Purkiss, A.G. / Silva Dos Santos, M. / MacRae, J.I. / Taylor, I.A. / Fugger, K. / West, S.C.
External linksNat Commun / PubMed:37884503
MethodsX-ray diffraction
Resolution1.65 - 1.78 Å
Structure data

PDB-8qhq:
Crystal structure of human DNPH1 bound to hmdUMP
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-8qhr:
Crystal structure of the human DNPH1 glycosyl-enzyme intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

Chemicals

ChemComp-5HU:
5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-3DR:
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE

ChemComp-B3P:
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

Source
  • homo sapiens (human)
KeywordsHYDROLASE / DNPH1 N-glycosidase hmdUMP / DNPH1 / N-glycosidase / hmdUMP / dRP

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