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Structure paper

TitleCD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms.
Journal, issue, pagesCell, Vol. 186, Page 4583-4596.e13, Year 2023
Publish dateMar 22, 2023 (structure data deposition date)
AuthorsHuang, S. / Shahine, A. / Cheng, T.Y. / Chen, Y.L. / Ng, S.W. / Balaji, G.R. / Farquhar, R. / Gras, S. / Hardman, C.S. / Altman, J.D. ...Huang, S. / Shahine, A. / Cheng, T.Y. / Chen, Y.L. / Ng, S.W. / Balaji, G.R. / Farquhar, R. / Gras, S. / Hardman, C.S. / Altman, J.D. / Tahiri, N. / Minnaard, A.J. / Ogg, G.S. / Mayfield, J.A. / Rossjohn, J. / Moody, D.B.
External linksCell / PubMed:37725977
MethodsX-ray diffraction
Resolution1.6 - 2.1 Å
Structure data

PDB-8gle:
Crystal Structure of Human CD1b in Complex with Lysosulfatide
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-8glf:
Crystal Structure of Human CD1b in Complex with Sphingomyelin C34:2
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-8glg:
Crystal Structure of Human CD1b in Complex with Phosphatidylethanolamine C34:1
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-8glh:
Crystal Structure of Human CD1b in Complex with Endogenous PC C40:5
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-8gli:
Crystal Structure of Human CD1b in Complex with Mycobacterial C85-GMM
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-SGF:
(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside

ChemComp-CUY:
tetracosyl octadecanoate

ChemComp-IOD:
IODIDE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-3LY:
[(~{Z},2~{R},3~{S})-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate

ChemComp-6UL:
TETRACOSYL PALMITATE

ChemComp-NI:
NICKEL (II) ION

ChemComp-L9Q:
(1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate

ChemComp-3IV:
(11E)-hexadec-11-enoic acid

ChemComp-3IY:
[(2~{R})-1-dodecanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] (8~{Z},11~{Z},14~{Z},24~{Z},27~{Z})-triaconta-8,11,14,24,27-pentaenoate

ChemComp-NA:
Unknown entry

ChemComp-ZR2:
6-O-[(2R,3R)-3-hydroxy-20-{(1R,2S)-2-[(17R,18R)-17-methoxy-18-methyldotriacontyl]cyclopropyl}-2-pentadecylicosanoyl]-alpha-L-galactopyranose

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

Source
  • homo sapiens (human)
KeywordsIMMUNE SYSTEM / lipid / CD1b / lysosulfatide / lyso / Sphingomyelin / Phosphatidylethanolamine / PE / Antigen Presentation / phospholipid / CD1 / Antigen / TB

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