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Structure paper

TitleStructure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Journal, issue, pagesRna, Vol. 29, Page 44-54, Year 2022
Publish dateAug 3, 2022 (structure data deposition date)
AuthorsKiliszek, A. / Pluta, M. / Bejger, M. / Rypniewski, W.
External linksRna / PubMed:36319090
MethodsX-ray diffraction
Resolution1.79 - 2.86 Å
Structure data

PDB-8amg:
Crystal structure of AUGUGGCAU duplex with barium ions (model 1)
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

PDB-8ami:
Crystal structure of AUGUGGCAU duplex with barium ions (model 2)
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

PDB-8amj:
Crystal structure of unliganded AUGUGGCAU duplex
Method: X-RAY DIFFRACTION / Resolution: 2.02 Å

PDB-8amk:
Crystal structure of AUGUGGCAU duplex crystallized in the presence of calcium ions
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-8aml:
Crystal structure of AUGUGGCAU duplex with cadmium ions
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-8amm:
Crystal structure of AUGUGGCAU duplex with cesium ions
Method: X-RAY DIFFRACTION / Resolution: 2.86 Å

PDB-8amn:
Crystal structure of AUGUGGCAU duplex with strontium ions
Method: X-RAY DIFFRACTION / Resolution: 2.46 Å

Chemicals

ChemComp-BA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NA:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-SO4:
SULFATE ION

ChemComp-CD:
Unknown entry

ChemComp-CS:
Unknown entry

ChemComp-SR:
STRONTIUM ION

Source
  • homo sapiens (human)
KeywordsRNA / UG wobble / Ba ions / UGG repeats / Ca ions / Cd ions

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