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Structure paper

TitleConformation and Pairing Properties of an O 6 -Methyl-2'-deoxyguanosine-Directed Benzimidazole Nucleoside Analog in Duplex DNA.
Journal, issue, pagesChem. Res. Toxicol., Vol. 35, Page 1903-1913, Year 2022
Publish dateMay 16, 2022 (structure data deposition date)
AuthorsKellum Jr., A.H. / Pallan, P.S. / Nilforoushan, A. / Sturla, S.J. / Stone, M.P. / Egli, M.
External linksChem. Res. Toxicol. / PubMed:35973057
MethodsX-ray diffraction
Resolution1.74 - 2.32 Å
Structure data

PDB-8cty:
12-mer DNA structure of ExBIM bound to RNase-H
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8ctz:
12-mer DNA structure of ExBIM & O6Me-G bound to RNase-H
Method: X-RAY DIFFRACTION / Resolution: 2.32 Å

PDB-8cu0:
12-mer DNA structure of ExBIM bound to RNaseH -modified DDD
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CL:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-NA:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-HOH:
WATER

ChemComp-K:
Unknown entry

Source
  • halalkalibacterium halodurans (bacteria)
  • synthetic construct (others)
  • alkalihalobacillus halodurans (bacteria)
KeywordsDNA / alkylation / base stacking / DNA damage / H-bonding / O6-methyl-2'-deoxyguanosine / ExBIM

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