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TitleSingle crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 119, Page e2205664119-e2205664119, Year 2022
Publish dateJan 26, 2022 (structure data deposition date)
AuthorsRose, S.L. / Baba, S. / Okumura, H. / Antonyuk, S.V. / Sasaki, D. / Hedison, T.M. / Shanmugam, M. / Heyes, D.J. / Scrutton, N.S. / Kumasaka, T. ...Rose, S.L. / Baba, S. / Okumura, H. / Antonyuk, S.V. / Sasaki, D. / Hedison, T.M. / Shanmugam, M. / Heyes, D.J. / Scrutton, N.S. / Kumasaka, T. / Tosha, T. / Eady, R.R. / Yamamoto, M. / Hasnain, S.S.
External linksProc. Natl. Acad. Sci. USA / PubMed:35862453
MethodsX-ray diffraction
Resolution1.19 - 1.61 Å
Structure data

PDB-7qxk:
As isolated MSOX movie series dataset 1 (0.4 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-7qy4:
As isolated MSOX movie series dataset 5 (2 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-7qyc:
As isolated MSOX movie series dataset 20 (8 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-7zcn:
Nitrite-bound MSOX movie series dataset 1 (0.8 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - nitrite (start)
Method: X-RAY DIFFRACTION / Resolution: 1.19 Å

PDB-7zco:
Nitrite-bound MSOX movie series dataset 8 (6.4 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - nitrite/NO intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.22 Å

PDB-7zcp:
Nitrite-bound MSOX movie series dataset 17 (13.6 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - nitric oxide (NO) intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.29 Å

PDB-7zcq:
Nitrite-bound MSOX movie series dataset 25 (20 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - NO/water intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-7zcr:
Nitrite-bound MSOX movie series dataset 38 (30.4 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - water ligand
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-7zcs:
Nitrite-bound MSOX movie series dataset 65 (52 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - water ligand (final)
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-CU:
COPPER (II) ION

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-NO2:
NITRITE ION

ChemComp-NO:
NITRIC OXIDE

Source
  • bradyrhizobium sp. ors 375 (bacteria)
KeywordsOXIDOREDUCTASE / Nitrite reductase / Copper nitrite reductase / Copper-containing nitrite reductase / BrNiR / Br2DNiR / as isolated / MSOX / nitrite-bound

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