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TitleCryo-electron microscopy of Na ,K -ATPase reveals how the extracellular gate locks in the E2·2K state.
Journal, issue, pagesFEBS Lett, Vol. 596, Issue 19, Page 2513-2524, Year 2022
Publish dateJun 23, 2022
AuthorsRyuta Kanai / Flemming Cornelius / Bente Vilsen / Chikashi Toyoshima /
PubMed AbstractNa ,K -ATPase (NKA) is one of the most important members of the P-type ion-translocating ATPases and plays a pivotal role in establishing electrochemical gradients for Na and K across the cell ...Na ,K -ATPase (NKA) is one of the most important members of the P-type ion-translocating ATPases and plays a pivotal role in establishing electrochemical gradients for Na and K across the cell membrane. Presented here is a 3.3 Å resolution structure of NKA in the E2·2K state solved by cryo-electron microscopy. It is a stable state with two occluded K after transferring three Na into the extracellular medium and releasing inorganic phosphate bound to the cytoplasmic P domain. We describe how the extracellular ion pathway wide open in the E2P state becomes closed and locked in E2·2K , linked to events at the phosphorylation site more than 50 Å away. We also show, although at low resolution, how ATP binding to NKA in E2·2K relaxes the gating machinery and thereby accelerates the transition into the next step, that is, the release of K into the cytoplasm, more than 100 times.
External linksFEBS Lett / PubMed:35747985
MethodsEM (single particle)
Resolution3.3 - 7.2 Å
Structure data

EMDB-33601, PDB-7y45:
Cryo-EM structure of the Na+,K+-ATPase in the E2.2K+ state
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-33602, PDB-7y46:
Cryo-EM structure of the Na+,K+-ATPase in the E2.2K+ state after addition of ATP
Method: EM (single particle) / Resolution: 7.2 Å

Chemicals

ChemComp-K:
Unknown entry

ChemComp-CLR:
CHOLESTEROL / Cholesterol

ChemComp-PCW:
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE / DOPC, phospholipid*YM

ChemComp-HOH:
WATER / Water

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM / Adenosine triphosphate

Source
  • squalus acanthias (spiny dogfish)
  • spiny dogfish (spiny dogfish)
KeywordsMEMBRANE PROTEIN / Na+ / K+-ATPase / ion transport / TRANSPORT PROTEIN

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