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Structure paper

TitleTowards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Journal, issue, pagesNucleic Acids Res., Vol. 50, Page 6038-6051, Year 2022
Publish dateJan 13, 2022 (structure data deposition date)
AuthorsMair, S. / Erharter, K. / Renard, E. / Brillet, K. / Brunner, M. / Lusser, A. / Kreutz, C. / Ennifar, E. / Micura, R.
External linksNucleic Acids Res. / PubMed:35687141
MethodsX-ray diffraction
Resolution0.86 - 1.2 Å
Structure data

PDB-7qsh:
23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648
Method: X-RAY DIFFRACTION / Resolution: 0.86 Å

PDB-7qtn:
Duplex RNA containing Xanthosine-Cytosine base pairs
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

PDB-7qua:
Duplex RNA containing Xanthosine-Cytosine base pairs
Method: X-RAY DIFFRACTION / Resolution: 1 Å

Chemicals

ChemComp-URI:
URIDINE

ChemComp-HYJ:
9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-NA:
Unknown entry

ChemComp-MG:
Unknown entry

Source
  • synthetic construct (others)
KeywordsRNA / modified base

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