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Structure paper

TitleStructural and ITC Characterization of Peptide-Protein Binding: Thermodynamic Consequences of Cyclization Constraints, a Case Study on Vascular Endothelial Growth Factor Ligands.
Journal, issue, pagesChemistry, Year 2022
Publish dateMay 12, 2020 (structure data deposition date)
AuthorsGaucher, J.F. / Reille-Seroussi, M. / Broussy, S.
External linksChemistry / PubMed:35665969
MethodsX-ray diffraction
Resolution1.6 - 2.1 Å
Structure data

PDB-6z13:
VEGF-A 13:107 crystallized with 3C bicyclic peptide
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6z3f:
VEGF-A 13:107 crystallized with 2C bicyclic peptide
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6zbr:
VEGF-A 13:107 crystallized with 4C bicyclic peptide
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-6zcd:
VEGF-A 13:107 crystallized with 1C bicyclic peptide
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6zfl:
High resolution structure of VEGF-A 12:107 crystallized in tetragonal form
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-NH2:
AMINO GROUP

ChemComp-ACY:
ACETIC ACID

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsPEPTIDE BINDING PROTEIN / growth factor / peptide ligand / lactam bridge / alpha-helix stabilization / SIGNALING PROTEIN

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