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Structure paper

TitleCritical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates.
Journal, issue, pagesJ. Biol. Chem., Vol. 297, Page 100967-100967, Year 2021
Publish dateAug 6, 2020 (structure data deposition date)
AuthorsShimada, A. / Hara, F. / Shinzawa-Itoh, K. / Kanehisa, N. / Yamashita, E. / Muramoto, K. / Tsukihara, T. / Yoshikawa, S.
External linksJ. Biol. Chem. / PubMed:34274318
MethodsX-ray diffraction
Resolution1.74 - 1.84 Å
Structure data

PDB-7cp5:
Bovine heart cytochrome c oxidase in a catalytic intermediate of E at 1.76 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.76 Å

PDB-7d5w:
Bovine heart cytochrome c oxidase in a catalytic intermediate of O at 1.84 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.84 Å

PDB-7d5x:
Bovine heart cytochrome c oxidase in a catalytic intermediate, IO10, at 1.74 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

Chemicals

ChemComp-HEA:
HEME-A

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-PER:
PEROXIDE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-CHD:
CHOLIC ACID

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-ZN:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-OXY:
OXYGEN MOLECULE

Source
  • bos taurus (domestic cattle)
KeywordsOXIDOREDUCTASE / cytochrome c oxidase membrane protein heme protein

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