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Structure paper

TitleStructural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A.
Journal, issue, pagesArch. Biochem. Biophys., Vol. 698, Page 108727-108727, Year 2020
Publish dateJun 2, 2020 (structure data deposition date)
AuthorsCampbell, A.C. / Bogner, A.N. / Mao, Y. / Becker, D.F. / Tanner, J.J.
External linksArch. Biochem. Biophys. / PubMed:33333077
MethodsX-ray diffraction
Resolution1.41 - 1.56 Å
Structure data

PDB-6x99:
Structure of proline utilization A with D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Method: X-RAY DIFFRACTION / Resolution: 1.56 Å

PDB-6x9a:
Structure of proline utilization A with trans-4-hydroxy-D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Method: X-RAY DIFFRACTION / Resolution: 1.41 Å

PDB-6x9b:
Structure of proline utilization A with cis-4-hydroxy-D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Method: X-RAY DIFFRACTION / Resolution: 1.46 Å

PDB-6x9c:
Structure of proline utilization A with L-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Method: X-RAY DIFFRACTION / Resolution: 1.44 Å

PDB-6x9d:
Structure of proline utilization A with trans-4-hydroxy-L-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Method: X-RAY DIFFRACTION / Resolution: 1.54 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-SO4:
SULFATE ION

ChemComp-DPR:
D-PROLINE

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-HOH:
WATER

ChemComp-FMT:
FORMIC ACID

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-UY7:
(4S)-4-hydroxy-D-proline

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-MG:
Unknown entry

ChemComp-UYA:
(4R)-4-hydroxy-D-proline

ChemComp-NAI:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

ChemComp-FDA:
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE

ChemComp-PRO:
PROLINE

ChemComp-HYP:
4-HYDROXYPROLINE

Source
  • sinorhizobium meliloti (strain sm11) (bacteria)
KeywordsOXIDOREDUCTASE / FLAVOENZYME / ROSSMANN FOLD / PROLINE DEHYDROGNEASE / ALDEHYDE DEHYDROGENASE / PROLINE CATABOLISM / SUBSTRATE CHANNELING / BIFUNCTIONAL ENZYME

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