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Structure paper

TitleCharacterization of the first tetrameric transcription factor of the GntR superfamily with allosteric regulation from the bacterial pathogen Agrobacterium fabrum.
Journal, issue, pagesNucleic Acids Res., Vol. 49, Page 529-546, Year 2021
Publish dateMay 29, 2020 (structure data deposition date)
AuthorsVigouroux, A. / Meyer, T. / Naretto, A. / Legrand, P. / Aumont-Nicaise, M. / Di Cicco, A. / Renoud, S. / Dore, J. / Levy, D. / Vial, L. ...Vigouroux, A. / Meyer, T. / Naretto, A. / Legrand, P. / Aumont-Nicaise, M. / Di Cicco, A. / Renoud, S. / Dore, J. / Levy, D. / Vial, L. / Lavire, C. / Morera, S.
External linksNucleic Acids Res. / PubMed:33313837
MethodsX-ray diffraction
Resolution1.65 - 2.8 Å
Structure data

PDB-6z74:
Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6za0:
Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum (P21212 space group)
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-6za3:
Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (C2221 space group)
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-6za7:
Structure of the apo transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum
Method: X-RAY DIFFRACTION / Resolution: 2.34 Å

PDB-6zab:
Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (P6422 space group)
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-CIT:
CITRIC ACID

ChemComp-GOL:
GLYCEROL

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SO4:
SULFATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-CL:
Unknown entry

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-ACT:
ACETATE ION

Source
  • agrobacterium fabrum (strain c58 / atcc 33970) (bacteria)
  • agrobacterium fabrum str. c58 (bacteria)
KeywordsTRANSCRIPTION / Transcriptional repressor / repressor

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