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Structure paper

TitleViral macrodomains: a structural and evolutionary assessment of the pharmacological potential.
Journal, issue, pagesOpen Biology, Vol. 10, Page 200237-200237, Year 2020
Publish dateMay 27, 2020 (structure data deposition date)
AuthorsRack, J.G.M. / Zorzini, V. / Zhu, Z. / Schuller, M. / Ahel, D. / Ahel, I.
External linksOpen Biology / PubMed:33202171
MethodsX-ray diffraction
Resolution1.571 - 2.3 Å
Structure data

PDB-6z5t:
SARS-CoV-2 Macrodomain in complex with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 1.571 Å

PDB-6z6i:
SARS-CoV-2 Macrodomain in complex with ADP-HPD
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6z72:
SARS-CoV-2 Macrodomain in complex with ADP-HPM
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-APR:
ADENOSINE-5-DIPHOSPHORIBOSE

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-A1R:
5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-GOL:
GLYCEROL

ChemComp-MPO:
3[N-MORPHOLINO]PROPANE SULFONIC ACID / pH buffer*YM

ChemComp-A3R:
Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol

ChemComp-MLT:
D-MALATE

Source
  • severe acute respiratory syndrome coronavirus 2
KeywordsVIRAL PROTEIN / Viral Macrodomain / ADP-ribose binding module / ADP-ribosylhydrolase / ADP-ribosylation / ADP-HPD / ADP-HPM

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