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TitleSubstrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods.
Journal, issue, pagesAppl. Microbiol. Biotechnol., Vol. 104, Page 10515-10529, Year 2020
Publish dateJun 4, 2020 (structure data deposition date)
AuthorsVoutilainen, S. / Heinonen, M. / Andberg, M. / Jokinen, E. / Maaheimo, H. / Paakkonen, J. / Hakulinen, N. / Rouvinen, J. / Lahdesmaki, H. / Kaski, S. ...Voutilainen, S. / Heinonen, M. / Andberg, M. / Jokinen, E. / Maaheimo, H. / Paakkonen, J. / Hakulinen, N. / Rouvinen, J. / Lahdesmaki, H. / Kaski, S. / Rousu, J. / Penttila, M. / Koivula, A.
External linksAppl. Microbiol. Biotechnol. / PubMed:33147349
MethodsX-ray diffraction
Resolution1.5 - 1.86 Å
Structure data

PDB-6z9h:
Escherichia coli D-2-deoxyribose-5-phosphate aldolase - C47V/G204A/S239D mutant
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

PDB-6z9i:
Escherichia coli D-2-deoxyribose-5-phosphate aldolase - N21K mutant complex with reaction products
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-6z9j:
Escherichia coli D-2-deoxyribose-5-phosphate aldolase - N21K mutant
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-FMT:
FORMIC ACID

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-G3H:
GLYCERALDEHYDE-3-PHOSPHATE

Source
  • escherichia coli (E. coli)
KeywordsLYASE / Aldolase / DERA

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