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Structure paper

TitleThree-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.
Journal, issue, pagesSci Adv, Vol. 6, Year 2020
Publish dateMar 26, 2020 (structure data deposition date)
AuthorsRumnieks, J. / Lieknina, I. / Kalnins, G. / Sisovs, M. / Akopjana, I. / Bogans, J. / Tars, K.
External linksSci Adv / PubMed:32917600
MethodsX-ray diffraction
Resolution1.248 - 4.018 Å
Structure data

PDB-6yf7:
Virus-like particle of bacteriophage AC
Method: X-RAY DIFFRACTION / Resolution: 3.4 Å

PDB-6yf9:
Virus-like particle of bacteriophage AVE002
Method: X-RAY DIFFRACTION / Resolution: 3.196 Å

PDB-6yfa:
Virus-like particle of bacteriophage AVE015
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-6yfb:
Virus-like particle of bacteriophage AVE016
Method: X-RAY DIFFRACTION / Resolution: 3.59 Å

PDB-6yfc:
Virus-like particle of bacteriophage AVE019
Method: X-RAY DIFFRACTION / Resolution: 3.246 Å

PDB-6yfd:
Virus-like particle of Beihai levi-like virus 14
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-6yfe:
Virus-like particle of Beihai levi-like virus 19
Method: X-RAY DIFFRACTION / Resolution: 3.794 Å

PDB-6yff:
Virus-like particle of Beihai levi-like virus 21
Method: X-RAY DIFFRACTION / Resolution: 3.089 Å

PDB-6yfg:
Virus-like particle of Beihai levi-like virus 32
Method: X-RAY DIFFRACTION / Resolution: 3.897 Å

PDB-6yfh:
Virus-like particle of bacteriophage EMS014
Method: X-RAY DIFFRACTION / Resolution: 3.893 Å

PDB-6yfi:
Bacteriophage EMS014 coat protein
Method: X-RAY DIFFRACTION / Resolution: 1.248 Å

PDB-6yfj:
Virus-like particle of bacteriophage ESE001
Method: X-RAY DIFFRACTION / Resolution: 3.233 Å

PDB-6yfk:
Virus-like particle of bacteriophage ESE007
Method: X-RAY DIFFRACTION / Resolution: 3.7 Å

PDB-6yfl:
Virus-like particle of bacteriophage ESE020
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-6yfm:
Virus-like particle of bacteriophage ESE021
Method: X-RAY DIFFRACTION / Resolution: 2.762 Å

PDB-6yfn:
Virus-like particle of bacteriophage ESE058
Method: X-RAY DIFFRACTION / Resolution: 3.189 Å

PDB-6yfo:
Virus-like particle of bacteriophage GQ-907
Method: X-RAY DIFFRACTION / Resolution: 3.484 Å

PDB-6yfp:
Virus-like particle of bacteriophage GQ-112
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

PDB-6yfq:
Virus-like particle of bacteriophage NT-214
Method: X-RAY DIFFRACTION / Resolution: 3.8 Å

PDB-6yfr:
Virus-like particle of bacteriophage NT-391
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-6yfs:
Virus-like particle of bacteriophage PQ-465
Method: X-RAY DIFFRACTION / Resolution: 3.498 Å

PDB-6yft:
Virus-like particle of Wenzhou levi-like virus 1
Method: X-RAY DIFFRACTION / Resolution: 3.5 Å

PDB-6yfu:
Virus-like particle of Wenzhou levi-like virus 4
Method: X-RAY DIFFRACTION / Resolution: 4.018 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER / Water

ChemComp-ZN:
Unknown entry

Source
  • marine phage ac (environmental samples)
  • leviviridae sp. (virus)
  • beihai levi-like virus 14
  • beihai levi-like virus 19
  • beihai levi-like virus 21
  • beihai levi-like virus 32
  • wenzhou levi-like virus 1
  • unidentified (others)
  • wenzhou levi-like virus 4
KeywordsVIRUS LIKE PARTICLE / virus / virus-like particle / structural protein / VIRAL PROTEIN

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