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Structure paper

TitleBinding of inhibitors to active-site mutants of CD1, the enigmatic catalytic domain of histone deacetylase 6.
Journal, issue, pagesActa Crystallogr. ,Sect. F, Vol. 76, Page 428-437, Year 2020
Publish dateMay 13, 2020 (structure data deposition date)
AuthorsOsko, J.D. / Christianson, D.W.
External linksActa Crystallogr. ,Sect. F / PubMed:32880591
MethodsX-ray diffraction
Resolution1.90001463957 - 2.40006356531 Å
Structure data

PDB-6wyo:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) H82F F202Y double mutant complexed with Trichostatin A
Method: X-RAY DIFFRACTION / Resolution: 2.30000278768 Å

PDB-6wyp:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) K330L mutant complexed with SAHA-BPyne
Method: X-RAY DIFFRACTION / Resolution: 2.40006356531 Å

PDB-6wyq:
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) K330L mutant complexed with 4-iodo-SAHA
Method: X-RAY DIFFRACTION / Resolution: 1.90001463957 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-TSN:
TRICHOSTATIN A / antifungal, antibiotic*YM

ChemComp-HOH:
WATER

ChemComp-UFS:
N~1~-(4-{4-[(hex-5-ynoyl)amino]benzene-1-carbonyl}phenyl)-N~8~-hydroxyoctanediamide

ChemComp-UFJ:
N~1~-hydroxy-N~8~-(4-iodophenyl)octanediamide

Source
  • danio rerio (zebrafish)
KeywordsHYDROLASE / Histone Deacetylase / metalloprotein

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