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TitleThe HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site.
Journal, issue, pagesMbio, Vol. 11, Year 2020
Publish dateOct 28, 2019 (structure data deposition date)
AuthorsPrevost, J. / Tolbert, W.D. / Medjahed, H. / Sherburn, R.T. / Madani, N. / Zoubchenok, D. / Gendron-Lepage, G. / Gaffney, A.E. / Grenier, M.C. / Kirk, S. ...Prevost, J. / Tolbert, W.D. / Medjahed, H. / Sherburn, R.T. / Madani, N. / Zoubchenok, D. / Gendron-Lepage, G. / Gaffney, A.E. / Grenier, M.C. / Kirk, S. / Vergara, N. / Han, C. / Mann, B.T. / Chenine, A.L. / Ahmed, A. / Chaiken, I. / Kirchhoff, F. / Hahn, B.H. / Haim, H. / Abrams, C.F. / Smith 3rd, A.B. / Sodroski, J. / Pazgier, M. / Finzi, A.
External linksMbio / PubMed:32457241
MethodsX-ray diffraction
Resolution2.2 - 2.65 Å
Structure data

PDB-6usw:
CRYSTAL STRUCTURE OF HIV-1 LM/HS CLADE A/E CRF01 GP120 CORE IN COMPLEX WITH (S)-MCG-IV-210
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-6ut1:
CRYSTAL STRUCTURE OF HIV-1 LM/HS CLADE A/E CRF01 GP120 CORE IN COMPLEX WITH BNM-III-170
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-6utb:
CRYSTAL STRUCTURE OF UNLIGANDED HIV-1 LM/HT CLADE A/E CRF01 GP120 CORE
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-6utd:
CRYSTAL STRUCTURE OF UNLIGANDED HIV-1 LM/HS CLADE A/E CRF01 GP120 CORE
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-O51:
(3S)-N~1~-(2-aminoethyl)-N~3~-(4-chloro-3-fluorophenyl)piperidine-1,3-dicarboxamide

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-5VG:
~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-(methylaminomethyl)-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide

Source
  • human immunodeficiency virus 1
KeywordsIMMUNE SYSTEM / HIV-1 GP120 / CLADE A/E CF01 / VIRAL PROTEIN

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