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Structure paper

TitleStructural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody.
Journal, issue, pagesSci Rep, Vol. 9, Page 15481-15481, Year 2019
Publish dateJan 25, 2019 (structure data deposition date)
AuthorsAkiba, H. / Tamura, H. / Kiyoshi, M. / Yanaka, S. / Sugase, K. / Caaveiro, J.M.M. / Tsumoto, K.
External linksSci Rep / PubMed:31664051
MethodsX-ray diffraction
Resolution1.15 - 1.65 Å
Structure data

PDB-6jb2:
Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6jb5:
Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme (form II)
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-6jb8:
Crystal structure of nanobody D3-L11 in complex with hen egg-white lysozyme
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-6jb9:
Crystal structure of nanobody D3-L11 (unbound form)
Method: X-RAY DIFFRACTION / Resolution: 1.15 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NO3:
NITRATE ION

ChemComp-NA:
Unknown entry

ChemComp-SO4:
SULFATE ION

Source
  • camelus dromedarius (Arabian camel)
  • gallus gallus (chicken)
KeywordsIMMUNE SYSTEM/HYDROLASE / nanobody / hot-spot mutagenesis / thermodynamics / biomolecular recognition / IMMUNE SYSTEM / IMMUNE SYSTEM-HYDROLASE complex

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