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Structure paper

TitleAn oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Journal, issue, pagesScience, Vol. 366, Page 334-338, Year 2019
Publish dateMar 6, 2019 (structure data deposition date)
AuthorsSuga, M. / Akita, F. / Yamashita, K. / Nakajima, Y. / Ueno, G. / Li, H. / Yamane, T. / Hirata, K. / Umena, Y. / Yonekura, S. ...Suga, M. / Akita, F. / Yamashita, K. / Nakajima, Y. / Ueno, G. / Li, H. / Yamane, T. / Hirata, K. / Umena, Y. / Yonekura, S. / Yu, L.J. / Murakami, H. / Nomura, T. / Kimura, T. / Kubo, M. / Baba, S. / Kumasaka, T. / Tono, K. / Yabashi, M. / Isobe, H. / Yamaguchi, K. / Yamamoto, M. / Ago, H. / Shen, J.R.
External linksScience / PubMed:31624207
MethodsX-ray diffraction
Resolution2.15 - 2.5 Å
Structure data

PDB-6jlj:
XFEL structure of cyanobacterial photosystem II (dark state, dataset1)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-6jlk:
XFEL structure of cyanobacterial photosystem II (1F state, dataset1)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-6jll:
XFEL structure of cyanobacterial photosystem II (2F state, dataset1)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-6jlm:
XFEL structure of cyanobacterial photosystem II (dark state, dataset2)
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-6jln:
XFEL structure of cyanobacterial photosystem II (1F state, dataset2)
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-6jlo:
XFEL structure of cyanobacterial photosystem II (2F state, dataset2)
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-6jlp:
XFEL structure of cyanobacterial photosystem II (3F state, dataset2)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-FE2:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM

ChemComp-CLA:
CHLOROPHYLL A

ChemComp-PHO:
PHEOPHYTIN A

ChemComp-BCR:
BETA-CAROTENE

ChemComp-SQD:
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

ChemComp-GOL:
GLYCEROL

ChemComp-LMT:
DODECYL-BETA-D-MALTOSIDE / detergent*YM

ChemComp-OEX:
CA-MN4-O5 CLUSTER

ChemComp-PL9:
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE


ChemComp, No image

ChemComp-UNL:
Unknown ligand

ChemComp-CA:
Unknown entry

ChemComp-HTG:
heptyl 1-thio-beta-D-glucopyranoside / detergent*YM

ChemComp-LMG:
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

ChemComp-DGD:
DIGALACTOSYL DIACYL GLYCEROL (DGDG)

ChemComp-LHG:
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / phospholipid*YM

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-MG:
Unknown entry

ChemComp-HEC:
HEME C

ChemComp-HOH:
WATER

ChemComp-OEY:
CA-MN4-O6 CLUSTER

Source
  • thermosynechococcus vulcanus (bacteria)
KeywordsPHOTOSYNTHESIS / photosystem II / PSII / membrane protein

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