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TitleThe crystal structures of CDD-1, the intrinsic class D beta-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime.
Journal, issue, pagesJ. Struct. Biol., Vol. 208, Page 107391-107391, Year 2019
Publish dateAug 9, 2018 (structure data deposition date)
AuthorsStewart, N.K. / Smith, C.A. / Toth, M. / Stasyuk, A. / Vakulenko, S.B.
External linksJ. Struct. Biol. / PubMed:31550535
MethodsX-ray diffraction
Resolution1.4 - 2.1 Å
Structure data

PDB-6edm:
Structure of apo-CDD-1 beta-lactamase
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-6pqc:
Structure of cefotaxime-CDD-1 beta-lactamase complex
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-CEF:
CEFOTAXIME, C3' cleaved, open, bound form / antibiotic*YM

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

Source
  • clostridioides difficile (bacteria)
KeywordsHYDROLASE / beta-lactamase / class D / apo protein / ANTIMICROBIAL PROTEIN / HYDROLASE/HYDROLASE Inhibitor / Gram-positive / cefotaxime / HYDROLASE-HYDROLASE Inhibitor complex

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