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Structure paper

TitleGut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.
Journal, issue, pagesNat Microbiol, Vol. 4, Page 2082-2089, Year 2019
Publish dateOct 1, 2018 (structure data deposition date)
AuthorsZaramela, L.S. / Martino, C. / Alisson-Silva, F. / Rees, S.D. / Diaz, S.L. / Chuzel, L. / Ganatra, M.B. / Taron, C.H. / Secrest, P. / Zuniga, C. ...Zaramela, L.S. / Martino, C. / Alisson-Silva, F. / Rees, S.D. / Diaz, S.L. / Chuzel, L. / Ganatra, M.B. / Taron, C.H. / Secrest, P. / Zuniga, C. / Huang, J. / Siegel, D. / Chang, G. / Varki, A. / Zengler, K.
External linksNat Microbiol / PubMed:31548686
MethodsX-ray diffraction
Resolution1.8 - 2.2 Å
Structure data

PDB-6mnj:
Hadza microbial sialidase Hz136
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-6mrv:
Sialidase26 co-crystallized with DANA
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6mrx:
Sialidase26 apo
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6myv:
Sialidase26 co-crystallized with DANA-Gc
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-DAN:
2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID

ChemComp-GC9:
2,6-anhydro-3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-L-altro-non-2-enonic acid

Source
  • alistipes (bacteria)
  • unidentified bacterium (bacteria)
KeywordsHYDROLASE / Sialidase / microbiome / Hadza / Neu5Gc / Neu5Ac / sialic acid / inflammation / season / Neu5Ac2en / DANA / Neu5Gc2en / DANA-Gc / Gc

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