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Structure paper

TitleFragment-based discovery of the first nonpeptidyl inhibitor of an S46 family peptidase.
Journal, issue, pagesSci Rep, Vol. 9, Page 13587-13587, Year 2019
Publish dateApr 10, 2019 (structure data deposition date)
AuthorsSakamoto, Y. / Suzuki, Y. / Nakamura, A. / Watanabe, Y. / Sekiya, M. / Roppongi, S. / Kushibiki, C. / Iizuka, I. / Tani, O. / Sakashita, H. ...Sakamoto, Y. / Suzuki, Y. / Nakamura, A. / Watanabe, Y. / Sekiya, M. / Roppongi, S. / Kushibiki, C. / Iizuka, I. / Tani, O. / Sakashita, H. / Inaka, K. / Tanaka, H. / Yamada, M. / Ohta, K. / Honma, N. / Shida, Y. / Ogasawara, W. / Nakanishi-Matsui, M. / Nonaka, T. / Gouda, H. / Tanaka, N.
External linksSci Rep / PubMed:31537874
MethodsX-ray diffraction
Resolution1.5 - 2.39 Å
Structure data

PDB-6jtb:
Crystal structure of dipeptidyl peptidase 11 (DPP11) with citrate from Porphyromonas gingivalis (Space)
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6jtc:
Crystal structure of dipeptidyl peptidase 11 (DPP11) with SH-5 from Porphyromonas gingivalis (Space)
Method: X-RAY DIFFRACTION / Resolution: 2.39 Å

Chemicals

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-CIT:
CITRIC ACID

ChemComp-GOL:
GLYCEROL

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-C8O:
2-(2-azanylethylamino)-5-nitro-benzoic acid

Source
  • porphyromonas gingivalis (strain atcc 33277 / dsm 20709 / cip 103683 / jcm 12257 / nctc 11834 / 2561) (bacteria)
KeywordsHYDROLASE / dipeptidyl aminopeptidase / S46 / perio / Microgravity / antimicrobial

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