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Structure paper

TitleDynamic and Functional Profiling of Xylan-Degrading Enzymes inAspergillusSecretomes Using Activity-Based Probes.
Journal, issue, pagesAcs Cent. Sci., Vol. 5, Page 1067-1078, Year 2019
Publish dateDec 13, 2018 (structure data deposition date)
AuthorsSchroder, S.P. / de Boer, C. / McGregor, N.G.S. / Rowland, R.J. / Moroz, O. / Blagova, E. / Reijngoud, J. / Arentshorst, M. / Osborn, D. / Morant, M.D. ...Schroder, S.P. / de Boer, C. / McGregor, N.G.S. / Rowland, R.J. / Moroz, O. / Blagova, E. / Reijngoud, J. / Arentshorst, M. / Osborn, D. / Morant, M.D. / Abbate, E. / Stringer, M.A. / Krogh, K.B.R.M. / Raich, L. / Rovira, C. / Berrin, J.G. / van Wezel, G.P. / Ram, A.F.J. / Florea, B.I. / van der Marel, G.A. / Codee, J.D.C. / Wilson, K.S. / Wu, L. / Davies, G.J. / Overkleeft, H.S.
External linksAcs Cent. Sci. / PubMed:31263766
MethodsX-ray diffraction
Resolution1.42 - 2.14 Å
Structure data

PDB-6q7i:
GH3 exo-beta-xylosidase (XlnD)
Method: X-RAY DIFFRACTION / Resolution: 1.48 Å

PDB-6q7j:
GH3 exo-beta-xylosidase (XlnD) in complex with xylobiose aziridine activity based probe
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-6q8m:
GH10 endo-xylanase
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-6q8n:
GH10 endo-xylanase in complex with xylobiose epoxide inhibitor
Method: X-RAY DIFFRACTION / Resolution: 1.76 Å

PDB-6qe8:
Crystal structure of Aspergillus niger GH11 endoxylanase XynA in complex with xylobiose epoxide activity based probe
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-ACT:
ACETATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-HLB:
5-[3,3-dimethyl-2-[5-(1,3,3-trimethylindol-2-ylidene)penta-1,3-dienyl]indol-1-ium-1-yl]-~{N}-[8-[[(1~{R},2~{S},3~{S},4~{S},5~{R})-2,3,4,5-tetrakis(oxidanyl)cyclohexyl]amino]octyl]pentanamide

ChemComp-HQ8:
(1~{R},2~{S},4~{S},5~{R})-cyclohexane-1,2,3,4,5-pentol

ChemComp-XYP:
beta-D-xylopyranose

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-SO4:
SULFATE ION

ChemComp-HZB:
(1~{R},3~{S},4~{R},5~{R})-5-[(2~{S},3~{R},4~{S},5~{R})-3,4,5-tris(oxidanyl)oxan-2-yl]oxycyclohexane-1,2,3,4-tetrol

Source
  • emericella nidulans (mold)
  • emericella nidulans (strain fgsc a4 / atcc 38163 / cbs 112.46 / nrrl 194 / m139) (mold)
  • aspergillus aculeatus atcc 16872 (mold)
  • aspergillus niger (mold)
KeywordsHYDROLASE

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