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Structure paper

TitleLysine-Specific Histone Demethylase 1A Regulates Macrophage Polarization and Checkpoint Molecules in the Tumor Microenvironment of Triple-Negative Breast Cancer.
Journal, issue, pagesFront Immunol, Vol. 10, Page 1351-1351, Year 2019
Publish dateJan 21, 2019 (structure data deposition date)
AuthorsTan, A.H.Y. / Tu, W. / McCuaig, R. / Hardy, K. / Donovan, T. / Tsimbalyuk, S. / Forwood, J.K. / Rao, S.
External linksFront Immunol / PubMed:31249575
MethodsX-ray diffraction
Resolution2.7 - 2.9 Å
Structure data

PDB-6nqm:
Crystal structure of Human LSD1
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-6nqu:
Human LSD1 in complex with GSK2879552
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-6nr5:
Human LSD1 in complex with Phenelzine sulfate
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-KWM:
[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[(9~{S},11~{R})-15,16-dimethyl-11-oxidanyl-5,7-bis(oxidanylidene)-9-phenyl-2,4,6,12-tetrazabicyclo[11.4.0]heptadeca-1(17),13,15-trien-2-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate

ChemComp-KXM:
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R)-5-[(4aR)-7,8-dimethyl-2,4-dioxo-5-(2-phenylethyl)-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)

Source
  • homo sapiens (human)
KeywordsOXIDOREDUCTASE / Lysine-specific histone demethylase / cofactor / oxidoreductase/oxidoreductase inhibitor / Lysine-specific histone demethylase 1A / complex / inhibitor / oxidoreductase-oxidoreductase inhibitor complex

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