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Structure paper

TitleMolecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 116, Page 13299-13304, Year 2019
Publish dateJun 1, 2019 (structure data deposition date)
AuthorsChekan, J.R. / Ongpipattanakul, C. / Wright, T.R. / Zhang, B. / Bollinger Jr., J.M. / Rajakovich, L.J. / Krebs, C. / Cicchillo, R.M. / Nair, S.K.
External linksProc. Natl. Acad. Sci. USA / PubMed:31209034
MethodsX-ray diffraction
Resolution1.51 - 2.15 Å
Structure data

PDB-5bk9:
AAD-1 Bound to the Vanadyl Ion and Succinate
Method: X-RAY DIFFRACTION / Resolution: 1.51 Å

PDB-5bkb:
Crystal structure of AAD-1 in complex with (R)-dichlorprop, Mn(II), and 2-oxoglutarate
Method: X-RAY DIFFRACTION / Resolution: 1.582 Å

PDB-5bkc:
Crystal structure of AAD-1 in complex with (R)-diclofop, Mn(II), and 2-oxoglutarate
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5bkd:
Crystal structure of AAD-1 in complex with (R)-cyhalofop, Mn(II), and 2-oxoglutarate
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5bke:
Crystal structure of AAD-2 in complex with Mn(II) and N-oxalylglycine
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

Chemicals

ChemComp-SIN:
SUCCINIC ACID

ChemComp-VVO:
oxovanadium(2+)

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-FTV:
(2R)-2-(2,4-dichlorophenoxy)propanoic acid

ChemComp-SO4:
SULFATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-O0D:
(2R)-2-{4-[(3,5-dichloropyridin-2-yl)oxy]phenoxy}propanoic acid

ChemComp-RCF:
(2R)-2-[4-(4-cyano-2-fluorophenoxy)phenoxy]propanoic acid

ChemComp-OGA:
N-OXALYLGLYCINE / inhibitor*YM

ChemComp-K:
Unknown entry

Source
  • delftia acidovorans (bacteria)
  • bradyrhizobium diazoefficiens (strain jcm 10833 / iam 13628 / nbrc 14792 / usda 110) (bacteria)
KeywordsOXIDOREDUCTASE / aryloxyalkanoate dioxygenase / herbicide degradation / BIOSYNTHETIC PROTEIN / dioxygenase

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