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Structure paper

TitleStructural determinants of inhibition of Porphyromonas gingivalis gingipain K by KYT-36, a potent, selective, and bioavailable peptidase inhibitor.
Journal, issue, pagesSci Rep, Vol. 9, Page 4935-4935, Year 2019
Publish dateNov 22, 2018 (structure data deposition date)
AuthorsGuevara, T. / Rodriguez-Banqueri, A. / Lasica, A.M. / Ksiazek, M. / Potempa, B.A. / Potempa, J. / Gomis-Ruth, F.X.
External linksSci Rep / PubMed:30894633
MethodsX-ray diffraction
Resolution1.2 Å
Structure data

PDB-6i9a:
Porphyromonas gingivalis gingipain K (Kgp) in complex with inhibitor KYT-36
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

Chemicals

ChemComp-UNX:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-H8E:
benzyl-N-[(2S)-1-[[(3S)-7-amino-1-(benzylamino)-1,2-dioxoheptan-3-yl]amino]-5-(2-methyl-2-phenylhydrazinyl)-1,5-dioxopentan-2-yl]carbamate

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-GOL:
GLYCEROL

ChemComp-DTV:
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL

ChemComp-HOH:
WATER

Source
  • porphyromonas gingivalis (bacteria)
KeywordsHYDROLASE / peptidase inhibitor / custeine peptidase / gingipain / periodontopathogen / periodontal disease / Porphyromonas gingivalis

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