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Structure paper

TitleSubstrate binding mode and catalytic mechanism of human heparan sulfate d-glucuronyl C5 epimerase.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 116, Page 6760-6765, Year 2019
Publish dateOct 24, 2018 (structure data deposition date)
AuthorsDebarnot, C. / Monneau, Y.R. / Roig-Zamboni, V. / Delauzun, V. / Le Narvor, C. / Richard, E. / Henault, J. / Goulet, A. / Fadel, F. / Vives, R.R. ...Debarnot, C. / Monneau, Y.R. / Roig-Zamboni, V. / Delauzun, V. / Le Narvor, C. / Richard, E. / Henault, J. / Goulet, A. / Fadel, F. / Vives, R.R. / Priem, B. / Bonnaffe, D. / Lortat-Jacob, H. / Bourne, Y.
External linksProc. Natl. Acad. Sci. USA / PubMed:30872481
MethodsX-ray diffraction
Resolution2.1 - 2.52 Å
Structure data

PDB-6hzz:
Structure of human D-glucuronyl C5 epimerase
Method: X-RAY DIFFRACTION / Resolution: 2.52 Å

PDB-6i01:
Structure of human D-glucuronyl C5 epimerase in complex with substrate
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6i02:
Structure of human D-glucuronyl C5 epimerase in complex with product
Method: X-RAY DIFFRACTION / Resolution: 2.45 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-ACT:
ACETATE ION

ChemComp-SO4:
SULFATE ION

ChemComp-CA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-P6G:
HEXAETHYLENE GLYCOL / precipitant*YM

Source
  • homo sapiens (human)
KeywordsISOMERASE / C5-epimerase / heparan sulfate

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