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Structure paper

TitleSnapshot of an oxygen intermediate in the catalytic reaction of cytochromecoxidase.
Journal, issue, pagesProc. Natl. Acad. Sci. U.S.A., Vol. 116, Page 3572-3577, Year 2019
Publish dateJan 7, 2019 (structure data deposition date)
AuthorsIshigami, I. / Lewis-Ballester, A. / Echelmeier, A. / Brehm, G. / Zatsepin, N.A. / Grant, T.D. / Coe, J.D. / Lisova, S. / Nelson, G. / Zhang, S. ...Ishigami, I. / Lewis-Ballester, A. / Echelmeier, A. / Brehm, G. / Zatsepin, N.A. / Grant, T.D. / Coe, J.D. / Lisova, S. / Nelson, G. / Zhang, S. / Dobson, Z.F. / Boutet, S. / Sierra, R.G. / Batyuk, A. / Fromme, P. / Fromme, R. / Spence, J.C.H. / Ros, A. / Yeh, S.R. / Rousseau, D.L.
External linksProc. Natl. Acad. Sci. U.S.A. / PubMed:30808749
MethodsX-ray diffraction
Resolution2.5 - 2.9 Å
Structure data

PDB-6nkn:
Time-resolved SFX structure of the PR intermediate of cytochrome c oxidase at room temperature
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-6nmf:
SFX structure of reduced cytochrome c oxidase at room temperature
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-6nmp:
SFX structure of oxidized cytochrome c oxidase at room temperature
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

Chemicals

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HEA:
HEME-A

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-O:
OXYGEN ATOM

ChemComp-OH:
HYDROXIDE ION

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-CHD:
CHOLIC ACID

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-ZN:
Unknown entry

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-HOH:
WATER

ChemComp-PER:
PEROXIDE ION

Source
  • bos taurus (domestic cattle)
KeywordsOXIDOREDUCTASE / complex IV / membrane protein / Terminal enzyme / electron transfer

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